“Paraspeckleomics” - defining the interactome of a paraspeckle. — ASN Events

“Paraspeckleomics” - defining the interactome of a paraspeckle. (#416)

Amanda Blythe 1 , Sven Hennig 2 , Archa Fox 3 , Charlie Bond 1
  1. University of Western Australia, Crawley, WA, Australia
  2. Chemical Genomics Centre, Dortmund, Germany
  3. Harry Perkins Institute of Medical Research, Nedlands, Western Australia, Australia

Paraspeckles are dynamic, ribonucleoprotein bodies found in eukaryotic cell nuclei.  The formation of paraspeckles depends on the transcription of the long non-coding RNA, NEAT1, which acts as a scaffold for the recruitment of some 40 nuclear proteins 1 2 .  Paraspeckle associated proteins and the regulation of NEAT1 transcription, have been implicated in a variety of human cancers and disease.  Currently, paraspeckles are thought to be stress-responsive warehouses that exhibit transcriptional control via protein/RNA sequestration.  The dynamic accumulation of such a large variety of protein factors in a single ribonuclear body is a unique aspect of paraspeckles and as such could represent a paradigm shift of how ribonuclear proteins are organised within the nucleus. 

The individual paraspeckle protein components are multi-domain proteins containing a combination of protein-binding, RNA-binding, and low complexity domains 2 .   This provokes immediate intrigue into investigating the molecular details of how these proteins interact with each other and RNA.  To characterise the paraspeckle interactome, we have carried out large-scale yeast-2-hybrid screens to define paraspeckle protein interactions. Biophysical techniques such as microscale thermophoresis, isothermal titration calorimetry, co-expression, co-crystallisation and small-angle X-ray scattering are subsequently used to validate and characterise interactions.  These techniques will provide detailed insight into the mechanism of paraspeckle proteins and/or RNA interaction and a structural basis for the functional links between these proteins and for the paraspeckle as a whole.  Through this study we hope to gain insight into the paraspeckle complex formation for possible future therapeutic targets.

  1. Bond, C. S., and Fox, A. H. (2009) Paraspeckles: nuclear bodies built on long noncoding RNA, J Cell Biol 186, 637-644.
  2. Naganuma, T., Nakagawa, S., Tanigawa, A., Sasaki, Y. F., Goshima, N., and Hirose, T. (2012) Alternative 3'-end processing of long noncoding RNA initiates construction of nuclear paraspeckles, EMBO J 31, 4020-4034