“Paraspeckleomics” - defining the interactome of a paraspeckle. (#416)
Paraspeckles are dynamic, ribonucleoprotein bodies found in eukaryotic cell nuclei. The formation of paraspeckles depends on the transcription of the long non-coding RNA, NEAT1, which acts as a scaffold for the recruitment of some 40 nuclear proteins 1 2 . Paraspeckle associated proteins and the regulation of NEAT1 transcription, have been implicated in a variety of human cancers and disease. Currently, paraspeckles are thought to be stress-responsive warehouses that exhibit transcriptional control via protein/RNA sequestration. The dynamic accumulation of such a large variety of protein factors in a single ribonuclear body is a unique aspect of paraspeckles and as such could represent a paradigm shift of how ribonuclear proteins are organised within the nucleus.
The individual paraspeckle protein components are multi-domain proteins containing a combination of protein-binding, RNA-binding, and low complexity domains 2 . This provokes immediate intrigue into investigating the molecular details of how these proteins interact with each other and RNA. To characterise the paraspeckle interactome, we have carried out large-scale yeast-2-hybrid screens to define paraspeckle protein interactions. Biophysical techniques such as microscale thermophoresis, isothermal titration calorimetry, co-expression, co-crystallisation and small-angle X-ray scattering are subsequently used to validate and characterise interactions. These techniques will provide detailed insight into the mechanism of paraspeckle proteins and/or RNA interaction and a structural basis for the functional links between these proteins and for the paraspeckle as a whole. Through this study we hope to gain insight into the paraspeckle complex formation for possible future therapeutic targets.
- Bond, C. S., and Fox, A. H. (2009) Paraspeckles: nuclear bodies built on long noncoding RNA, J Cell Biol 186, 637-644.
- Naganuma, T., Nakagawa, S., Tanigawa, A., Sasaki, Y. F., Goshima, N., and Hirose, T. (2012) Alternative 3'-end processing of long noncoding RNA initiates construction of nuclear paraspeckles, EMBO J 31, 4020-4034